PM3 (chemistry)
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PM3, or Parametric Method 3, is a
semi-empirical Empirical evidence for a proposition is evidence, i.e. what supports or counters this proposition, that is constituted by or accessible to sense experience or experimental procedure. Empirical evidence is of central importance to the sciences an ...
method for the
quantum In physics, a quantum (plural quanta) is the minimum amount of any physical entity (physical property) involved in an interaction. The fundamental notion that a physical property can be "quantized" is referred to as "the hypothesis of quantizati ...
calculation of molecular electronic structure in
computational chemistry Computational chemistry is a branch of chemistry that uses computer simulation to assist in solving chemical problems. It uses methods of theoretical chemistry, incorporated into computer programs, to calculate the structures and properties of m ...
. It is based on the Neglect of Differential Diatomic Overlap integral approximation. The PM3 method uses the same formalism and equations as the AM1 method. The only differences are: 1) PM3 uses two Gaussian functions for the core repulsion function, instead of the variable number used by AM1 (which uses between one and four Gaussians per element); 2) the numerical values of the parameters are different. The other differences lie in the philosophy and methodology used during the parameterization: whereas AM1 takes some of the parameter values from spectroscopical measurements, PM3 treats them as optimizable values. The method was developed by J. J. P. Stewart and first published in 1989. It is implemented in the
MOPAC MOPAC is a popular computer program used in computational chemistry. It is designed to implement semi-empirical quantum chemistry algorithms, and it runs on Windows, Mac, and Linux. MOPAC2016 is the current version. MOPAC2016 is able to perform ca ...
program (of which the older versions are public domain), along with the related RM1, AM1,
MNDO MNDO, or Modified Neglect of Diatomic Overlap is a semi-empirical method for the quantum calculation of molecular electronic structure in computational chemistry. It is based on the Neglect of Diatomic Differential Overlap integral approximation. ...
and
MINDO MINDO, or Modified Intermediate Neglect of Differential Overlap is a semi-empirical method for the quantum calculation of molecular electronic structure in computational chemistry. It is based on the Intermediate Neglect of Differential Overlap ( ...
methods, and in several other programs such as
Gaussian Carl Friedrich Gauss (1777–1855) is the eponym of all of the topics listed below. There are over 100 topics all named after this German mathematician and scientist, all in the fields of mathematics, physics, and astronomy. The English eponymo ...
,
CP2K CP2K is a freely available ( GPL) quantum chemistry and solid state physics program package, written in Fortran 2008, to perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems. It prov ...
,
GAMESS (US) General Atomic and Molecular Electronic Structure System (GAMESS (US)) is computer software for computational chemistry program. The original code started on October 1, 1977 as a National Resources for Computations in Chemistry project. In 1981, t ...
,
GAMESS (UK) General Atomic and Molecular Electronic Structure System (GAMESS-UK) is a computer software program for computational chemistry. The original code split in 1981 into GAMESS-UK and GAMESS (US) variants, which now differ significantly. Many of the ...
,
PC GAMESS Firefly, formerly named PC GAMESS, is an ab initio computational chemistry program for Intel-compatible x86, x86-64 processors based on GAMESS (US) sources. However, it has been mostly rewritten (60-70% of the code), especially in platform-spe ...
, Chem3D,
AMPAC AMPAC is a general-purpose semiempirical quantum chemistry program. It is marketed by Semichem, Inc. and was developed originally by Michael Dewar and his group. The first version of AMPAC (2.1) was made available in 1985 through the Quantum Che ...
, ArgusLab,
BOSS Boss may refer to: Occupations * Supervisor, often referred to as boss * Air boss, more formally, air officer, the person in charge of aircraft operations on an aircraft carrier * Crime boss, the head of a criminal organization * Fire boss, a ...
, and
SPARTAN Sparta ( Doric Greek: Σπάρτα, ''Spártā''; Attic Greek: Σπάρτη, ''Spártē'') was a prominent city-state in Laconia, in ancient Greece. In antiquity, the city-state was known as Lacedaemon (, ), while the name Sparta refe ...
. The original PM3 publication included parameters for the following elements: H, C, N, O, F, Al, Si, P, S, Cl, Br, and I. The PM3 implementation in the SPARTAN program includes PM3tm with additional extensions for transition metals supporting calculations on Ca, Ti, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, Zr, Mo, Tc, Ru, Rh, Pd, Hf, Ta, W, Re, Os, Ir, Pt, and Gd. Many other elements, mostly metals, have been parameterized in subsequent work. A model for the PM3 calculation of lanthanide complexes, calle
Sparkle/PM3
was also introduced.


References

* * * * *For a recent review, *{{cite journal, journal=Chemical Physics Letters, year=2006, volume=425, issue=1–3, pages= 138–141, doi=10.1016/j.cplett.2006.04.103, title=Modeling rare earth complexes: Sparkle/PM3 parameters for thulium(III), last1=Freire, first1=Ricardo O., last2=Rocha, first2=Gerd B., last3=Simas, first3=Alfredo M., bibcode = 2006CPL...425..138F Semiempirical quantum chemistry methods